YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77748367
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTLQRRQLIS TIYESAMHCK LFYCMTFLFW TASSMDSGVI QSPRHLVKGK EQKARMQCTP  60
   61 IKEHSYVYWY YKKLGEDLKF LVYFQNTDIM DKTDMIKKII SAECFTNKTC TIEIKSSKLT 120
  121 DSAVYYCASS QSRTDNNQAQ YFGEGTRLSV LEDLKTVTPP KVSLFEPSEA EIADKQKATL 180
  181 VCLARGFFPD HVELSWWVNG KEIRNGVSTD PQAYKESNNI TYCLSSRLRV SAPFWHNPRN 240
  241 HFRCQVQFYG LTEEDNWSED SPKPVTQNIS AEAWGRADCG ITSASYQQGV LSATILYEIL 300
  301 IGKATLYAVL VSTLVVMAMV KRKSS

Type	Start	End	Confidence
Cytoplasmic	1	18	0.59
Transmembrane Helix	19	34	0.60
Non-Cytoplasmic	35	298	0.96
Transmembrane Helix	299	320	0.69
Cytoplasmic	321	325	0.71