YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77748185
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLPEDCISSA AARDPHCLQM VPLRSKLLCL LVLLLVSGTL GAQANRNRGH DKQNNSFRKA  60
   61 ATGFYQTINN VLGEENVRAV QKFFSRLTER FVYGVDVLVE TLWRIWTDLL DVLGIDASNL 120
  121 THYFSPAAVA NNPTRVLMLV VAILLAYWFA SLLLGFFFYV LHIMFGRFFW LVRVSLFALS 180
  181 CIYILQKYEG EPEHAMIPLC FVVAVYFMTG PVGPYWRRSG NNNNNLEDKI DHLDNQIRLL 240
  241 NIRLTRVIES LDRASEQ

Type	Start	End	Confidence
Cytoplasmic	1	26	0.72
Transmembrane Helix	27	44	0.57
Non-Cytoplasmic	45	135	0.49
Transmembrane Helix	136	161	0.86
Cytoplasmic	162	168	0.47
Transmembrane Helix	169	186	0.92
Non-Cytoplasmic	187	193	0.51
Transmembrane Helix	194	216	0.87
Cytoplasmic	217	257	0.60