YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62899399
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.93
Transmembrane Helix	5	25	0.85
Cytoplasmic	26	31	0.88
Transmembrane Helix	32	55	0.86
Non-Cytoplasmic	56	82	0.90
Transmembrane Helix	83	102	0.95
Cytoplasmic	103	111	0.89
Transmembrane Helix	112	132	0.92
Non-Cytoplasmic	133	138	0.81
Transmembrane Helix	139	159	0.94
Cytoplasmic	160	170	0.93
Transmembrane Helix	171	193	0.87
Non-Cytoplasmic	194	214	0.90
Transmembrane Helix	215	236	0.86
Cytoplasmic	237	251	0.86
Transmembrane Helix	252	273	0.89
Non-Cytoplasmic	274	280	0.63
Transmembrane Helix	281	303	0.90
Cytoplasmic	304	314	0.79
Transmembrane Helix	315	335	0.82
Non-Cytoplasmic	336	345	0.63
Transmembrane Helix	346	365	0.84
Cytoplasmic	366	384	0.82
Transmembrane Helix	385	406	0.89
Non-Cytoplasmic	407	417	0.80
Transmembrane Helix	418	441	0.85
Cytoplasmic	442	538	0.89
Transmembrane Helix	539	560	0.91
Non-Cytoplasmic	561	597	0.85
Transmembrane Helix	598	616	0.89
Cytoplasmic	617	700	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIIPFVPLPV PMLIGVGLLL FPTATKNLRR MWAFPSILLL SIVMIFSTNL SIQQINRSST  60
   61 YQYVWSWALD NDFSLEFGYL IDPLTSIMSM LITTVGILVL IYSDNYMAHD QGYLRFFAYM 120
  121 SFFSTSMLGL VTSSNLIQIY IFWELVGMCS YLLIGFWFTR PPAANACQKA FVTNRVGDFG 180
  181 LLLGILGFYW ITGSFEFRDL FEIFNNLIYN NEVNSPFVTL CAALLFAGAV AKSAQFPLHV 240
  241 WLPDAMEGPT PISALIHAAT MVAAGIFLVA RLLPLFIIIP YIMNLISLIG IITVLLGATL 300
  301 ALAQKDIKRG LAYSTMSQLG YMMLALGMGS YRSALFHLIT HAYSKALLFL GSGSVIHSME 360
  361 TIIGYSPDKS QNMVLMGGLT KHVPITKTSF LLGTLSLCGI PPLACFWSKD EILNDSWLYS 420
  421 PIFAIIAWVT AGLTAFYMFR IYLLTFEGHL NVHFQNYSSN QNTSLYSISL WGKGCSKRIN 480
  481 KNFRLLRMNN NESSSFFSKK TYRSDENVRK RNRGRPFINI VHFDNKNPFS YPYESDNTML 540
  541 FSLLVLVLFT LFVGSLGIPF NQEGTDFDIL SKWLVPSINL LHQKSKDLTD RYEFLKDAIF 600
  601 SVSIAYFGIF LASFLYKPIY SSFKNFDLIN SFLKTGPKRS RWDKLLNVLY DWSYNRAYID 660
  661 VFYTISFTGS IRGLAQLTHF FDRQVIDGIT NGVGVISFFV