YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62899391
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.93
Transmembrane Helix	5	24	0.87
Cytoplasmic	25	31	0.86
Transmembrane Helix	32	55	0.86
Non-Cytoplasmic	56	80	0.92
Transmembrane Helix	81	102	0.91
Cytoplasmic	103	111	0.89
Transmembrane Helix	112	132	0.92
Non-Cytoplasmic	133	138	0.81
Transmembrane Helix	139	159	0.94
Cytoplasmic	160	170	0.93
Transmembrane Helix	171	193	0.86
Non-Cytoplasmic	194	214	0.90
Transmembrane Helix	215	236	0.86
Cytoplasmic	237	252	0.84
Transmembrane Helix	253	273	0.92
Non-Cytoplasmic	274	280	0.68
Transmembrane Helix	281	303	0.90
Cytoplasmic	304	314	0.80
Transmembrane Helix	315	335	0.81
Non-Cytoplasmic	336	345	0.62
Transmembrane Helix	346	365	0.79
Cytoplasmic	366	384	0.77
Transmembrane Helix	385	406	0.89
Non-Cytoplasmic	407	417	0.76
Transmembrane Helix	418	441	0.85
Cytoplasmic	442	537	0.85
Transmembrane Helix	538	560	0.90
Non-Cytoplasmic	561	597	0.83
Transmembrane Helix	598	616	0.94
Cytoplasmic	617	700	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIIPFVPLPV PVLIGVGLLL FPTATKKLRR MWAFPSILLL SIVMIFSTNL SIQQINSSSI  60
   61 YQYVWSWTLD NDFSLEFGYL IDPLTSIMLM LITTVGIMVL IYSDNYMAHD QGYLRFFAYM 120
  121 SFFSTSMLGL VTSSNLIQIY IFWELVGMCS YLLIGFWFTR PPAANACQKA FVTNRVGDFG 180
  181 LLLGILGFYW ITGSFEFQDL FEIFNNLIYN NEVNSPFVTL CAALLFAGAV AKSAQFPLHV 240
  241 WLPDAMEGPT PISALIHAAT MVAAGIFLVA RLLPLFIVIP YIMNFISLIG IITVLLGATL 300
  301 ALAQKDIKRG LAYSTMSQLG YMMLALGMGS YRSALFHLIT HAYSKALLFL GSGSVIHSME 360
  361 TIVGYSPDKS QNMVLMGGLT KHVPITKTSF LLGTLSLCGI PPLACFWSKD EILNESWLYS 420
  421 PIFAIIAWAT AGLTAFYMFR IYLLTFEGHL NVHFQNYNGN QNTSLYSISL WGKGCSKRIN 480
  481 KNFLLLKMNN NESSSFFSKN TYRSDENVRK RNRGRPFINI VDCYNQKSFS YPYESDNTML 540
  541 FPLLVLVLFT LFVGILGIPF NQEGRDLDIL SKWLAPSINL LHQKSEDSTD WYEFLKNAIF 600
  601 SVSIASFGIF LASFLYKPIY SSFKNFDLIN LFVKTGPKRS RWDKIINILY NWSYNRAYID 660
  661 TFYTTSFXGA IRGLAQLTDF FDRRVIDGIT NGVGVMSFFV