YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77416939
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIAAYLLA VLGGNTCPSE KDLKKILASV GAEADDDRIQ LLLSQVDGKD ITELIAAGRE  60
   61 KLASVPAGGG AACCSCCTWW CAVLLHLLLR RRRKKRKWKK KRCQMMTWAS VFSIRRSRRI 120
  121 QFMKCCPLFH LLFPLECILG GLLSTYRFCL NLEFSWKTLV SS

Type	Start	End	Confidence
Signal Peptide	1	19	0.58
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	66	0.98
Transmembrane Helix	67	89	0.94
Cytoplasmic	90	124	0.96
Transmembrane Helix	125	146	0.87
Non-Cytoplasmic	147	162	0.87