YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77176700
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLTLLIGT CVTGLFLYVL LNRCTRNPNR LPPGPTPWPV VGNLPHLGTI PHHSLAAMAK  60
   61 KYGPLMHLRL GFVDVVVAAS ASVAAQFLKT HDANFADRPP NSGAKHIAYN YQDLVFAPYG 120
  121 PRWRMLRKIC SVHLFSTKAL DDFRHVRQEE VAILARALVG AGKSPVKLGQ LLNVCTTNAL 180
  181 ARVMLGRRVF DSGDAQADEF KDMVVELMVL AGEFNIGDFI PVLDWLDLQG VTKKMKKLHA 240
  241 KFDSFLNTIL EEHKTGAGDG VASGKVDLLS TLISLKDDAD GEGGKLSDIE IKALLLNLFT 300
  301 AGTDTSSSTI EWAIAELIRN PQLLNQARKE MDTIVGQDRL VTESDLGQLT FLQAIIKETF 360
  361 RLHPSTPLSL PRMALESCEV GGYYIPKGST LLVNVWAISR DPKIWADPLE FQPTRFLPGG 420
  421 EKPNTDIKGN DFEVIPFGAG RRICVGMSLG LRMVQLLTAT LIHAFDWELA DGLNPKKLNM 480
  481 EEAYGLTLQR AAPLVVHPRP RLAPHVYETT KV

Type	Start	End	Confidence
Signal Peptide	1	21	0.59
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	512	0.94