YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213624292, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	41	0.76
Non-Cytoplasmic	42	54	0.69
Transmembrane Helix	55	76	0.88
Cytoplasmic	77	84	0.95
Transmembrane Helix	85	108	0.85
Non-Cytoplasmic	109	115	0.73
Transmembrane Helix	116	134	0.91
Cytoplasmic	135	142	0.81
Transmembrane Helix	143	160	0.96
Non-Cytoplasmic	161	166	0.74
Transmembrane Helix	167	186	0.93
Cytoplasmic	187	197	0.90
Transmembrane Helix	198	219	0.89
Non-Cytoplasmic	220	237	0.88
Transmembrane Helix	238	261	0.83
Cytoplasmic	262	285	0.67
Transmembrane Helix	286	310	0.58
Non-Cytoplasmic	311	385	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVSGAGGG GSGQAGNVRD GVRVAVLCLL WYSVSSGGNV VNKIILNGFP YPVTVSLFHI  60
   61 LAICCFLPPL LRAWGVPHTQ LPTRYYRWYI IPLAFGKYFA SVSAHFSIWK VPVSYAHTVK 120
  121 ATMPIWVVLL SRIIMKEKQT TKVYLSLVPI IGGVLLATVT EISFDMWGLI SALAATLCFS 180
  181 LQNIFSKKVL RDSRIHHLRL LNLLGCHAIF FMIPTWVLLD LSSFLVESDL SSVSQWPWTL 240
  241 LLLVISGTCN FAQNLIAFSI LNLISPLSYS VANATKRIMV ITVSLIMLRN PVTGTNVLGM 300
  301 MTAILGVFLY NKAKYDANQE AKKQLLPVTS GELQDHHHGP PEKQQNGMAT FSPGRDYQYG 360
  361 RTNVLTDHFQ YSRQSHPTAH NRYDV