YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62859061, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLRCKLLC LLLLVSGTLG AQANRNRGHD KQNNSFRKAA TGFYQTVNNV FGEENVRAVQ  60
   61 KFFSRLTERF VYGVDVLVET LWRIWTDLLE VLGIDASNLT HYFSPAAVAN NPTRVLMLVV 120
  121 AILLAYWFAS LLLGFFFYLL HIVFGRFFWL VRVSLFALSC IYILQKYEGE PEHAMIPLCF 180
  181 VVAVYFMTGP VGLYWRRSSN NNLEDKIDHL DNQIRLLNIR LTRVIESLDR ASEQ

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	116	0.98
Transmembrane Helix	117	140	0.90
Cytoplasmic	141	147	0.81
Transmembrane Helix	148	165	0.97
Non-Cytoplasmic	166	172	0.84
Transmembrane Helix	173	195	0.92
Cytoplasmic	196	234	0.97