YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213627808, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFLDNFRW PECECIDWGE KRNTIASVVA GVLFFSGWWI MIDAAVCYPD QKQLNHAFHT  60
   61 CGVFSTVAFF MINAVSNAQV RGDSYSDGCM GRTGARIWLF IGFMLMFGSL IASMWILFGA 120
  121 YVTQGLNVYP GLAVFFQNAL IFFSTLIYKF GRTEELWS

Type	Start	End	Confidence
Cytoplasmic	1	23	0.96
Transmembrane Helix	24	42	0.92
Non-Cytoplasmic	43	55	0.76
Transmembrane Helix	56	76	0.95
Cytoplasmic	77	96	0.91
Transmembrane Helix	97	118	0.96
Non-Cytoplasmic	119	127	0.79
Transmembrane Helix	128	150	0.88
Cytoplasmic	151	158	0.93