YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77920566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPPVPPRN EPSLFWLLAL SLALHAVVFV LFSGVFFASR RIEPRPVYYV DLSKMPVLNP  60
   61 QAGRPDGGPA PKVKKTSRPK ATKPKPAAAA PKAKAKPAPP KKTAVASKPA PTKPVASKTS 120
  121 TPSAKARTSP APKATAPSHN YQSVRQKLAA MREKQQREQE LAALKNKIAA LSGDNAGTSG 180
  181 GTGSGAPLGM PDGSGDEIGV DLQTWMQAYL KQNWTLSKYQ VTRRDLTATV HLAFNAEGSL 240
  241 TSYRIVKPSG DATFDDSVKK AVLKARALPR KPGRTLQLDV VFNLKDLMD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.42
Transmembrane Helix	14	38	0.65
Non-Cytoplasmic	39	289	0.72