YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77920304, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRPKRPQQS STVLKKLLHK TSLKAGKAPG TLVHIGKQRA EPIHINLIHY DPEHLNQRQL  60
   61 ASAEECRPHR DGPGISWFDI DGVHQLDVLQ DIGAAFDLHP LVLEDIVNTT HRPKVESFDN 120
  121 YLFMVLKMSQ FDSSSASVTT EQVSLILGPD YVLSFQEQKG DVFDSVRQRL RNGKGRLRKM 180
  181 GADYLAYVLL DSLVDSYFAV LESLGEEIER LEEDIIARPT PDTQSRIHHF KREMILLRKA 240
  241 VWPLRELISG LQREESPLLS DTTGIFLRDV YDHTIQIIDT VETLRDILSG LLDLYMSSIS 300
  301 NRMNEVMKVL TIIATIFIPL TFVAGIYGMN FEYMPELHWR WSYPLLWLGM ILMAGGMFIF 360
  361 FKRKQWL

Type	Start	End	Confidence
Cytoplasmic	1	305	0.98
Transmembrane Helix	306	328	0.90
Non-Cytoplasmic	329	342	0.80
Transmembrane Helix	343	361	0.97
Cytoplasmic	362	367	0.89