YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77545355, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMTKGKRIG VFLLLTLVLG CWVANLFVGC SEAKTGTPYE ELEQFTDVLT IIQKSYVEEV  60
   61 SMDKLIEGAI NGMLGVLDPH SSYLSPDMFR EMQIDTSGEF GGLGIEITLK EGVLTIVSPI 120
  121 EDTPADRMGL AAGDMIVKIG DRLTKDLSIM EAVKLMRGAS GTQVTITIMR EAFDKPREIT 180
  181 LTREIIKVKS VKSRLLDDGF GYVRLAQFQE RSGKDLKAAL KTLRAENKGE LRGLILDLRN 240
  241 NPGGLLEQAA DVADLFLRQG LIVYTEGRIE DSRMRFEAHR MGTEADYPMV VLINGGSASA 300
  301 SEIVAGALQD NRRAVILGTQ SFGKGSVQTV ISLENEAGLR LTTARYYTPS GSSIQAKGIT 360
  361 PDIVVRPMAL TEVQDGFSVR EKDLDNHFEI EGKTQGEPEN KQIPASPVSS DKIIEKDYQL 420
  421 LRALDLLKGW ELLKGLNKTA A

Type	Start	End	Confidence
Signal Peptide	1	33	0.89
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	441	0.99