YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77544946, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYNPKQLYQ RLWRYSKPYL PRVFLAMFAS IVVSGVDVAT AKLVKPFVDD VLMAADRGLA  60
   61 NLVPIIVIGL AVCKGGGRYI QEYFIKTAGQ MVVQDIRNDL YRHSMNLSMG YFSRSSTGNV 120
  121 MSRILNDVGA LQRSAADVMV DGLRESFTLM GLTFVAFQSD WRLATIAFLV MPVSIVPASV 180
  181 IGRRIKENTR RGQRTMGTLT RVLQESLAGI KVIKAFGSED RECQRFRTEN KRFYHFIRKV 240
  241 LKYDSAATPV IEILSSFGIG AVLWYGIRRV SDGAMTQGDL SAFIAALFMM YAPMKRLTKV 300
  301 SNTIQRSLGA AERVFELMDE VPEIADQPDA IQAPRAVGNI VFEHVGFSYG DEPVLHDLNL 360
  361 SIRAGEIAAL VGPSGGGKST VIGLLNRFYD PQQGAIHIDG YDIRQLTQDS LKQSMALVDQ 420
  421 ETFLFNDTVW NNIRYGRPEA SDSEVEEAAR QAYADEFVRA MPDGYETVIG DRGVRLSGGQ 480
  481 RQRICIARAI LRDAPILLLD EATSALDTES EATVQKALVN LMNNRTTIVV AHRLSTVMHA 540
  541 DKIVVLEGGR IREIGRHQDL LSGDGLYRRL YEMQFADRD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.88
Transmembrane Helix	20	41	0.88
Non-Cytoplasmic	42	57	0.85
Transmembrane Helix	58	77	0.65
Cytoplasmic	78	139	0.59
Transmembrane Helix	140	157	0.42
Non-Cytoplasmic	158	162	0.69
Transmembrane Helix	163	182	0.88
Cytoplasmic	183	245	0.91
Transmembrane Helix	246	267	0.85
Non-Cytoplasmic	268	273	0.84
Transmembrane Helix	274	294	0.78
Cytoplasmic	295	579	0.81