YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70800015, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQATVPLLA KIWFLAVAPV VILDAIFVLT RAKSVNLPHP LAEVVPFRYW AIYAQYDRRY  60
   61 AANDDSFVVV QSWLNLVEVA VGLFVTLLAI CDAQNVAIKL AIVVCLMTLY KTVFYCLIEI 120
  121 AEGGKYTRHN TVQEKLTMLI APLSVWIVVP SLILRQCFRA LAVASVPGPF KPKAAASQHH 180
  181 QQKYFGNSNN QGKKKN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.68
Transmembrane Helix	9	30	0.87
Non-Cytoplasmic	31	68	0.68
Transmembrane Helix	69	91	0.73
Cytoplasmic	92	96	0.52
Transmembrane Helix	97	118	0.68
Non-Cytoplasmic	119	135	0.53
Transmembrane Helix	136	154	0.72
Cytoplasmic	155	196	0.63