YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77456608, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGPSLPEND QHMPLVSHLT ELRTRLLRCV AAIFIIFAGL FAFTQQIYTF VSTPLREYLP  60
   61 AGATMIATDV SSPFLTPLKL TMMVSLFLAI PVILHQIWGF IAPGLYKHEK RVAVPLLISS 120
  121 ILLFYTGMAF AYFFVFPLIF KFFASATPAG VEMMTDITSY LDFVMTLFFA FGVAFEIPVA 180
  181 VVLLVWIGVV DVKYLKKIRP YVIIGCFVVG MILTPPDIFS QTLLAVPMWM LFEVGILFGS 240
  241 LVSKRERPEE TADDHNDQPP ATQP

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	48	0.87
Non-Cytoplasmic	49	79	0.93
Transmembrane Helix	80	102	0.87
Cytoplasmic	103	113	0.86
Transmembrane Helix	114	136	0.86
Non-Cytoplasmic	137	166	0.84
Transmembrane Helix	167	189	0.93
Cytoplasmic	190	197	0.89
Transmembrane Helix	198	216	0.91
Non-Cytoplasmic	217	222	0.68
Transmembrane Helix	223	242	0.87
Cytoplasmic	243	264	0.90