YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68534152, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKTRLIAVE NLLTDTHART VLADRPPHTL LTTSLSPPPS PPPSIWSLSL TPFLAQGGDR  60
   61 HLRGCQLFPH VGLGPPSYFL PILSTGDSWG MLACLCTVLW HLPAVPALNR TGDPGPGPSI 120
  121 QKTYDLTRYL EHQLRSLAGT YLNYLGPPFN EPDFNPPRLG AETLPRATVN LEVWRSLNDR 180
  181 LRLTQNYEAY SHLLCYLRGL NRQAATAELR RSLAHFCTSL QGLLGSIAGV MATLGYPLPQ 240
  241 PLPGTEPAWA PGPAHSDFLQ KMDDFWLLKE LQTWLWRSAK DFNRLKKKMQ PPAASVTLHL 300
  301 EAHGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	81	0.51
Transmembrane Helix	82	100	0.40
Cytoplasmic	101	212	0.72
Transmembrane Helix	213	236	0.64
Non-Cytoplasmic	237	305	0.93