YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62866633
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLVVTRSG KELIKGGLEL TDSATVTDLQ EAIHKRTRKY YPSRQRLTLP VQPGSKERPT  60
   61 VLHYKKSLNE YTNGSTSELT VVFKDLGPQV KYSTLFFWEY LGPLVLYPII YYFPVYKFFG 120
  121 YKEERVIHPV QTYAMYYWCF HYFKRIMETF FVHRFSHATS PLSNVFRNCA YYWSFGAFIA 180
  181 YYVNHPLYTP VSDLQMKIGF GFGLVCQVAN FYCHLLLRNL RSPSGNGGYQ IPYGFLFNIV 240
  241 TCANYTTEIY QWLGFNIATQ TVAGYVFMVV AASIMTNWAL GKHRRLRKLF DGKEGRPKYP 300
  301 RRWVILPPFL

Type	Start	End	Confidence
Cytoplasmic	1	163	0.74
Transmembrane Helix	164	185	0.75
Non-Cytoplasmic	186	197	0.72
Transmembrane Helix	198	217	0.91
Cytoplasmic	218	228	0.80
Transmembrane Helix	229	249	0.82
Non-Cytoplasmic	250	260	0.72
Transmembrane Helix	261	280	0.95
Cytoplasmic	281	310	0.98