YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68262546
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLCDGLGPE PPRQRHRNRT SAARIRKRPK CCCGDGGSGN QAEQPGGIVS NPISYGQSLT  60
   61 TLARVTAAAL TTAAMLHTTN ALAATGSSSA SNSSTGGIAL PLGTATPATH ELNATQPFGG 120
  121 TGLKFNESGA GLSDHHHHQQ HNPDEDWLDN IVWVFKAFVM LLIIIAAICG NLLVIISVMR 180
  181 VRKLRVITNY FVVSLAMADI MVAIMAMTFN FSVQVTGRWN FSPFLCDLWN SLDVYFSTAS 240
  241 ILHLCCISVD RYYAIVKPLK YPISMTKRVV GIMLLNTWIS PALLSFLPIF IGWYTTPQHQ 300
  301 QFVIQNPTQC SFVVNKYYAV ISSSISFWIP CTIMIFTYLA IFREANRQEK QLMMRHGNAM 360
  361 LMHRPSMQPS GEALSGSGSS KTLTLHEVEQ EHTPTKDKHL IKMKREHKAA RTLGIIMGTF 420
  421 ILCWLPFFLW YTLSMTCEVC QVPDIVVSIL FWIGYFNSTL NPLIYAYFNR DFREAFRNTL 480
  481 LCLFCNWWKD RHLPLDIDIR RSSLRYDQRA KSVYSESYLN STTPSHRRQS QMVDNL

Type	Start	End	Confidence
Cytoplasmic	1	61	0.85
Transmembrane Helix	62	84	0.64
Non-Cytoplasmic	85	156	0.88
Transmembrane Helix	157	178	0.92
Cytoplasmic	179	186	0.89
Transmembrane Helix	187	209	0.90
Non-Cytoplasmic	210	233	0.85
Transmembrane Helix	234	254	0.92
Cytoplasmic	255	271	0.90
Transmembrane Helix	272	294	0.90
Non-Cytoplasmic	295	320	0.91
Transmembrane Helix	321	342	0.90
Cytoplasmic	343	409	0.98
Transmembrane Helix	410	431	0.91
Non-Cytoplasmic	432	444	0.87
Transmembrane Helix	445	468	0.83
Cytoplasmic	469	536	0.96