YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76884351, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKEFARRR KHLLQMMGEG SIAILPTASI YPRNRDVMFP FRADSDFYYL TGFPEPEAVA  60
   61 VFAPGRKHGE YLLFCREQDP EKEIWEGRRA GTQGACKNYG ADDSFPITDI DDILPGLLED 120
  121 KARVYYAMGY YPAFDQRMIG WVNHIRRASR AGKRPPGEFI ALDHLLHEMR LIKSAQEIRT 180
  181 MREAARISAK AHIRAMENCH PGIMEYQIEA EYLHHFFSHG CRAPAYPSIV GSGGNACILH 240
  241 YTDNNARLKK GDLLLVDAGA EYDYYAADIT RTFPVSGRFS SAQRAIYELV LEAQLAAIAE 300
  301 VQPGNHWNQP HEAAVRVLTE GLAALGLLKG RVSTLLKKEH YRRFYMHRTG HWLGMDVHDV 360
  361 GDYKVDGEWR AFEPGMTLTV EPGVYIPADS QGVAKKWWNI GVRIEDDVLV TKEGCELLSA 420
  421 DVPKTVDEIE ALMASSQRGA SAS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.68
Transmembrane Helix	12	31	0.66
Non-Cytoplasmic	32	443	0.99