YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77165990, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFRDKVQVR EEDMKNKKTM AIMAIFTPLL LAVYTSALAE DDHPLYAPYK GWPPCAVMTG  60
   61 EGDMAPDGRS VTGVICRSTL FIPDSDKDGV PDDKDQCPNT PPGVEVDEVG CPLDSDNDGV 120
  121 PDYLDQCPDT PMGVEVGEDG CPLDSDGDGV PDYLDQCPDT PMGVEVNSQG CPLSVDSDGD 180
  181 GVPDDIDECP DTAYGVDVDE VGCPKPVVLE DGVHFGFDSA KLSPNAHTIL DKVVENMRTY 240
  241 PDLEITIAGH TDSTGNADYN QRLSQLRAEA AMNYLASKGI DPSRMEAIGY GEERPIASNS 300
  301 TKEGRAKNRR VELQTHDED

Type	Start	End	Confidence
Signal Peptide	1	39	0.57
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	319	0.99