YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76882157, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAIVFFESH PAAFMASAFL LGLTVGSFLN VVIYRLPLMM ERQWEEQCAE LHGKPQPERE  60
   61 PLTLSLPRSH CPACRRTIRA QENIPLFSYL LLRGRCRHCK APISLRYPLV ELLTGILSIA 120
  121 VAWRFGVSWE TMAALLLSYA LITLTFIDFD HQLLPDNITL PFLWFGLGLG LFEVFTDART 180
  181 SLIGAITGYL SLWLVYHLFR LLTKKEGMGY GDFKLLALLG AWLGWTMLPA IILLSSIVGA 240
  241 LLGTAWLYLS SQHRETPIPF GPYLAAAGWL ALMWGQDINQ FYLSLTGR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	34	0.92
Cytoplasmic	35	102	0.98
Transmembrane Helix	103	123	0.79
Non-Cytoplasmic	124	130	0.58
Transmembrane Helix	131	149	0.80
Cytoplasmic	150	157	0.57
Transmembrane Helix	158	176	0.84
Non-Cytoplasmic	177	181	0.56
Transmembrane Helix	182	201	0.87
Cytoplasmic	202	217	0.61
Transmembrane Helix	218	247	0.80
Non-Cytoplasmic	248	257	0.57
Transmembrane Helix	258	278	0.80
Cytoplasmic	279	288	0.49