YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76689675
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGNQTYVT EFVFLGLSQD PHTQVLLFFL FLIIYLLTVL GNLLIVVLIH IDSRLHTPMY  60
   61 FFLRNLSFAD LCFSTTTVPQ VLVHFLVKRK TISFAGCSTQ IVVLLLVGCT ECALLAVMSY 120
  121 DRYVAVCKPL HYTTIMTHRV CAQLATGSWA SGAFVSLVDT TFTLCLPYRE NNIINHFFCE 180
  181 PPALLKLASA DTYRTEMAIF AMGVAILLAP VSLILVSYWN IISTVIQMQS GEGRLKAFST 240
  241 CGSHLTVVVL FYGSAIFAYM RPNSKIMNER DKVISVFYSA VTPMLNPIIY SLRNKDVKGA 300
  301 LRRLIRKSKQ VDNYTSKKQR RKQNYHKYKI VFLANGFIFF ILACIHQIYF EYIIYFRSLI 360
  361 AETCSRASNM AKLRAQNGLG EKRLLPMSRK PCLVLFIQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.53
Transmembrane Helix	25	51	0.86
Cytoplasmic	52	60	0.51
Transmembrane Helix	61	86	0.68
Non-Cytoplasmic	87	93	0.43
Transmembrane Helix	94	120	0.72
Cytoplasmic	121	139	0.50
Transmembrane Helix	140	158	0.57
Non-Cytoplasmic	159	197	0.48
Transmembrane Helix	198	222	0.88
Cytoplasmic	223	236	0.49
Transmembrane Helix	237	260	0.85
Non-Cytoplasmic	261	273	0.47
Transmembrane Helix	274	292	0.48
Cytoplasmic	293	327	0.95
Transmembrane Helix	328	350	0.91
Non-Cytoplasmic	351	398	0.96