YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76688867
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLKVDQE VKLKVDSFRE RITSEAEDLV ANFFPKKLLE LDSFLKEPIL NIHDLTQIHS  60
   61 DMNLPVPDPI LLTNSHDGLD GPTYKKRRLD ECEEAFQGTK VFVMPNGMLK SNQQLVDIIE 120
  121 KVKPEIRLLI EKCNTVKMWV QLLIPRIEDG NNFGVSIQEE TVAELRTVES EAASYLDQIS 180
  181 RYYITRAKLV SKIAKYPHVE DYRRTVTEID EKEYISLRLI ISELRNQYVT LHDMILKNIE 240
  241 KIKRPRSSNA ETLIFTYTYV GEGPFLCDLG PFGLGVRVSA AVRPDAAAAT RLSLWEKCFL 300
  301 ICSIVLPGKV FTCVPLPAKT LPPSRPVFLS FPFCLLDCPV PLLLPLLPLD LTGRSSWWDS 360
  361 QLSAFTMNLK VVLVFLALSL ITIFALAYVL LTSRGGSSLP PRCPSVSPRA QPWTHPGQSQ 420
  421 LFADLSREEL MAVMSFLTQK LGPDLADAAQ ARPSDNCIFS VELQLPPKAA ALAHLDRGRP 480
  481 PPAREALAIV FFGRQPQPNV TELVVGPLPQ PSYMRDVTVE RHGGPLPYHR RPVLATESAQ 540
  541 MWMHLKKVEF PKAPVFLASV FNYNGSTLAA LHATPRGLRS GDRATWIALY HNISGVGIFL 600
  601 HPVGLELLLD HRALDPAHWA VQQVFYLGHY YSDLGQLEWE FKAGRLDVVR VPLPLPDGAS 660
  661 SLRSRVSPGP LPPLEFSPQG SRYSVQGHLV ESFLWTFTFG HGAFSGMRIF DVRFKGERVA 720
  721 YEVSVQECLS VYGADSPKTM MTRYLDSSYG LGRHSRGLVR GVDCPYQSTM VDTHVLVGQG 780
  781 AVQLLPGAVC VFEEAQGLPL RRHHNQLQSH FYGGLAGSAL VVRSVSSVGN YDYIWDFVLH 840
  841 PNGALEGRVH ATGYINTAFL SGGEESLLFG NRVGERVLGA VHTHAFHFKL DLDVAGLKNW 900
  901 VVAEDVVFKP VAAPWSPEHQ LQRPQLTRQV LGREDLTAFF LGSPLPRYLY LASNQTNAWG 960
  961 HQRGYRIQIH SPLGIHMPLD STMERALSWG RYQLAVTRRK EEESQSSSIY YQNDIWTATA1020
 1021 AFADFINNET LLGEDLVAWV TTSFLHIPHA EDVPNTVTLG NRVGFLLRPY NFFDEDPSIF1080
 1081 SPGSVYFEKG QDAGLCSVNH VACIPHLAAC VPDLPPFSYQ DL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle