YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61816288
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPAVPASA PPATPSEAPA AASSPASAPV PAPAPASASA PAPSPAPAAA PSPAPASSSD  60
   61 PAAAAATTAA PGQTPASAPA PAQTPAQSLS GPALPGPFPG GRVVRLHPVI LASIVDSYER 120
  121 RNEGAARVIG TLLGTVDKHS VEVTNCFSVP HNESEDEVAV DMEFAKNMYE LHKKVSPNEL 180
  181 ILGWYATGHD ITEHSVLIHE YYSREAPNPI HLTVDTSLQN GRMSIKAYVS TLMGVPGRTM 240
  241 GVMFTPLTVK YTYYDTERIG VDLIMKTCFS PNRVIGLSSD LQQVGGASAR IQDALSTVLQ 300
  301 YAEDVLSGKV SADNTVGRFL MSLVNQVPKI VPEDFETMLN SNINDLLMVT YLANLTQSQI 360
  361 ALNEKLVNL

Type	Start	End	Confidence
Signal Peptide	1	22	0.84
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	369	0.98