YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76684798
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKRLSLLL LLQLTCYFSG GSCGKVLVWP VEFSHWLNIK TILEELVTRG HEVTVLISSA  60
   61 STIPNSSKPS TMKFETFPVS LTKSDYENFM ERILEELTYV AKDSFWSYLS TVKNWNQFYS 120
  121 EVLGRPTTLS ETMGKAEMWL IRTYWDFSFP RPRLPNVEFV GGLHCKPAKP LPKEMEEFVQ 180
  181 SSGENGIVVF SLGSMVSNMS EDRAKVIASA FAQIPQKVLW RYDGKKPDTL RPNTRLYKWL 240
  241 PQNDLLGHPK TKAFITHGGS NGVYEAIYHG IPMVGTPLFA DQADNIARMK SKGTAVRLDL 300
  301 ETMSTRDLLN ALKEVINNPS YKENVMRLSA IQHDQPMKPL DRAVFWIEFV MRHKGAKHLR 360
  361 PAIHDLTWFQ YHSLDVIGFL LACVATAIFV ITKCCLFCCL KFAKLGKKEK RD

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	375	0.99
Transmembrane Helix	376	400	0.86
Cytoplasmic	401	412	0.92