YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111307510, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.83
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	61	0.81
Transmembrane Helix	62	83	0.77
Non-Cytoplasmic	84	92	0.78
Transmembrane Helix	93	115	0.89
Cytoplasmic	116	130	0.82
Transmembrane Helix	131	151	0.85
Non-Cytoplasmic	152	160	0.63
Transmembrane Helix	161	185	0.54
Cytoplasmic	186	251	0.78
Transmembrane Helix	252	276	0.85
Non-Cytoplasmic	277	290	0.72
Transmembrane Helix	291	310	0.90
Cytoplasmic	311	324	0.77
Transmembrane Helix	325	344	0.91
Non-Cytoplasmic	345	368	0.76
Transmembrane Helix	369	386	0.82
Cytoplasmic	387	393	0.67
Transmembrane Helix	394	414	0.91
Non-Cytoplasmic	415	434	0.71
Transmembrane Helix	435	457	0.80
Cytoplasmic	458	474	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLEGYYFS AALSCTFLVS CLLFSAFSRA LREPYMDEIF HLPQAQRYCE GHFSLSQWDP  60
   61 MITTLPGLYL LSVGVVKPAS WIFGWSEHVV CSIGMLRFVN LLFSVGNFYL LYLLLRKVQP 120
  121 RHKASSCIQR ILSTLTLAIF PTLYFFNFLY YTEAGSMFFT LFAYLMCLYG NHKTSALLGF 180
  181 CGFMFRQTNI IWAIFCAGNV IAQKLTEAWK TELQKKKEER PTPIKGPFSE FRKILQFLLA 240
  241 YSMSFKNLSM LLLLTWPYIL LMFLFCAFVA VNGGIVIGDR SSHEACLHFP QLFYFFSFTL 300
  301 FFSFPHLLSL NKIRAFLCLV WKRRIQFFVI TLVSIFLVWK FTYAHKYLLA DNRHYTFYVW 360
  361 KRVFQRYEIV KYLLVPVYIF AGWSIADSLK SKSIFWNLMF FICLFTVTVP QKLLEFRYFI 420
  421 LPYVIYRLNI PLPPTSRLVC ELGCYAVVNF LTFYIFLNKT FQWPNSQDIQ RFMW