YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76681062
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METAVRMSVG TVLRGPSSDD LLPLMSQPPG PAGRRARPVR PPPCVLGSGA LLSSPSAVGT  60
   61 GAWARVPLAE VVARPEEGVA TSGARPGPAE SAPERGERGR LRRPTITSPG GKEELVAVAS 120
  121 RLWQRRRRAC LAAVGVLLAM ALGLLIAVPL LLQAAPPGAA HYEMMGTCRM ICDPYTAAPG 180
  181 AGPAGAKAPP PGPSTAALEV MQDLSINPPP PFIQGPKGDP GRPGKPGPRG PPGEPGPPGP 240
  241 RGPPGEKGDS GRPGLPGLQL TAGAAGGVGV VGGGTGGGGD SEGEVTGALS AAFSGPKIAF 300
  301 YVGLKSPHEG YEVLKFDDVV TNLGNHYDPT TGKFSCQVRG IYFFTYHILM RGGDGTSMWA 360
  361 DLCKNGQVRA SAIAQDADQN YDYASNSVVL HLDSGDEVYV KLDGGKAHGG NNNKYSTFSG 420
  421 FLLYPD

Type	Start	End	Confidence
Cytoplasmic	1	128	0.96
Transmembrane Helix	129	151	0.91
Non-Cytoplasmic	152	426	0.88