YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76678173
Protein type: Globular with Signal Peptide
Type Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKKLKKFT TLELMLSILL LVVFIITIPI FVLSARDSLE SQDPGTTVSP DSGTSTTPGS  60
   61 AECPVVNDSE RINCIPDQSP TKATCDQRGC CWSPQGTISM PWCYYSKSHG YQVGGDLVNT 120
  121 NAGFTAQLKR LSSPLFGNDV NNVLLTAEYQ TSNRFHFKLT DQNQNRYEVP HEHVQPFTGN 180
  181 AASSLTYKVE VSKQPFGIKV IRTSNNRVLF DSSIGPLLFA HQFLQLSIRL PSANVYGLGE 240
  241 HVHQQYRHDM NWKTWPIFAR DTTPNGDGTN LYGAQTFFLC LEDASGLSFG VFLLNSNAME 300
  301 VFLQPTPAVT YRTIGGILDF YVFLGNTPEQ VVQEYLELVG RPALPSYWAL GFHLSRYDYG 360
  361 TLDNMKEVVE RNRAAQLPYD VQHADIDYMD ARKDFTYDPV AFKGFPEFVK ELHNNGQKLV 420
  421 IIVDPAISNN SSLSNPYGPY DRGSDMKIWV NTSDGVTPLI GEVWPGKTVF PDYTNPKCTA 480
  481 WWTNEFELFH SQVEFDGIWI DMNEVANFVD GSVSGCSTSN LNYPPFTPKI LDGYLFSKSI 540
  541 CMDAVQHWGQ HYDVHNLYGY SMAITTAETV KTVFPNKRSL ILTRSTFAGS GKFAAHWLGD 600
  601 NAATWSDLRW SIPGMLEFNL FGIPMVGADI CGFMLDTSEE LCRRWMQLGA FYPFSRNHNG 660
  661 QGYKAQDPAS FGPDSLLLNS SRHYLTIRYT LLPYLYTLFY RAHSRGDTVA RPLLHEFYQD 720
  721 SNTWDVHQQF LWGPGLLITP VLDEGAEKVT AYMPDAVWYD YETGGRVRWR KQKVEMELPG 780
  781 DKIGLHLRGG YIFPTQQPAT TTVASRRNPL GLIIALDENK EAKGELFWDD GETKDTVANN 840
  841 LYLLCEFSVT QNRLEVKILQ STYTDPNNLA FKEIKILGTQ EPNKVTVKQN GVPIQVSPNV 900
  901 TYDSNLQVAL ITEIDLVLGG TYTVEWDVKI RDEEKIDCYP DETGVSAENC TARGCAWEES 960
  961 SSHGVPFCYF VNDLYSVSDV QYDSHGASAV ITLKTSLYAH SFPSVPVNSL RLTVTYHKDN1020
 1021 MLQFKIYDPS NNRYEVPVPL NIPSIPSGTS ESQLYAVLIK KNPFGIEIRR KSTGTVIWDS1080
 1081 QLLGFTFNDM FIRISTRLPS KYLYGFGETE HTAFRRDLEW NTWGMFSRDQ PPGYKKNSYG1140
 1141 VHPYYMALEE DGSAHGVLLL NSNAM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle