YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76680711
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCRSQGFLKG PSASRSSEEE ASNLPCWSAL SSAGASPVRA SGGAPGPQHV EIRSTTRCGV  60
   61 SSGKFNSGSQ EGSYRNGLAA FVQVLSLRVH LAVLHKTQGH SIPVTKSSRS PGVTTAWRLP 120
  121 SSLVKPHPEP ETDSHMSPAT SSSEIQLHHL SNKDSTVPAS EVAVGIRYPS FHGPAVWWPC 180
  181 ALRWNLVCPC PWRIVDDCGG AFTMGTIGGG IFQAIKGFRN SPVGVNHRLR GSLTAIKTRA 240
  241 PQLGGSFAVW GGLFSMIDCS MVQIRGKEDP WNSITSGALT GAILAARNGP VAMVGSAAVG 300
  301 GVLLALIEGA GILLTRFASA QFPNGPPFAE DPSQLPSAQL PASPFGEYRQ YQ

Type	Start	End	Confidence
Cytoplasmic	1	239	0.50
Transmembrane Helix	240	264	0.60
Non-Cytoplasmic	265	290	0.42
Transmembrane Helix	291	315	0.76
Cytoplasmic	316	352	0.64