YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIPF6_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAVESPGD PGTTTPRPLF AGLSDISISQ DIPVEGEITI PVRSRVREFD SSTLNESVQN  60
   61 TIMRDLKAVG KKFMHVLYPR KSNTLLRDWD LWGPLILCVT LALMLQRGSV DSEKDGGPQF 120
  121 AEVFVIVWFG AVTITLNSKL LGGNISFFQS LCVLGYCILP LTMAMLVCRL VLLAEPGPVN 180
  181 FMVRLFVVII MFAWSIVAST AFLADSQPPN RKALAVYPVF LFYFVISWMI LTFTPQ

Type	Start	End	Confidence
Cytoplasmic	1	88	0.96
Transmembrane Helix	89	108	0.89
Non-Cytoplasmic	109	119	0.78
Transmembrane Helix	120	141	0.84
Cytoplasmic	142	150	0.72
Transmembrane Helix	151	173	0.91
Non-Cytoplasmic	174	180	0.87
Transmembrane Helix	181	204	0.91
Cytoplasmic	205	212	0.89
Transmembrane Helix	213	233	0.93
Non-Cytoplasmic	234	236	0.77