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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76680447
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECKEEIKMDL SVSVNSVTIS VEGMTCSSCV WTIEQQIGKL NGVHHIKVSL EEKNATVIYD  60
   61 PKLQTPKTLQ EAIDDMGFDA ILHNPKPLPV LTETVFLTVT ASLVPPWDHI QSTLLKTKGV 120
  121 TDIKISPQQR TAVVTIIPSI VNANQIVELV PDLSLDTGTL EKKSGTCEDY SMAQPGEVML 180
  181 KMKVEGMTCH SCTSTIEGKI GKLQGVQRIK VSLDNQEATV VYQPHLITAE EIKKQIEVVG 240
  241 FTAFIKKQPK YLKLGAIDIE RLKNTPVKSS EGSQQKSPSY TSNSTVIFTI DGMHCKSCVS 300
  301 NIESALSTLQ HISSVVVSLE NKSAIVKYNA SLVTPETLRK AIEAISQGQY RVSSASEIES 360
  361 TSNSPSSSSL QKSPLNIVSQ PLTQETVINI DGMTCNSCVQ SIEGVISKKA GVKSIQVSLA 420
  421 NGKGTVEYDP LLTSPETLRE AIENMGFDAS LSDTNEPLVV IAQPSSEMPL LTSTNEFHTK 480
  481 MMTPIHDKEE PKTSSKCYIQ VTGMTCASCV ANIERNLRRE EGIYSILVAL MAGKAEVRYN 540
  541 PALIQPPVIA ELIRELGFGS TVIENADEGD GVLELVVRGM TCASCVHKIE STLTKHRGIF 600
  601 YCSVALATNK AHIKYDPEII GPRDIIHTIE SLGFEASLVK KDRSASHLDH KREIRQWRRA 660
  661 FLVSLFFCIP VMGLMIYMMV MDHHLASLQH NQNMSQEEMI NIHSSMFLER QILPGLSIMN 720
  721 LLSFLLCVPV QFFGGWHFYI QAYKALKHKT ANMDVLIVLA TTIAFAYSLV ILLVAMYERA 780
  781 KVNPVTFFDT PPMLFVFIAL GRWLEHVAKG KTSEALAKLI SLQATEATIV TLDSDNILLS 840
  841 EEQVDVELVQ RGDIIKVVPG GKFPVDGRVI EGHSMVDESL ITGEAMPVAK KSGSTVIAGS 900
  901 INQNGSLLIR ATHVGADTTL SQIVKLVEEA QTSKAPIQQF ADKLSGYFVP FIVIVSIATL 960
  961 LVWIIIGFLN FEIVETYFP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle