YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76677311, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.89
Transmembrane Helix	132	155	0.76
Non-Cytoplasmic	156	161	0.69
Transmembrane Helix	162	180	0.76
Cytoplasmic	181	207	0.72
Transmembrane Helix	208	228	0.78
Non-Cytoplasmic	229	234	0.66
Transmembrane Helix	235	255	0.90
Cytoplasmic	256	263	0.63
Transmembrane Helix	264	282	0.95
Non-Cytoplasmic	283	293	0.75
Transmembrane Helix	294	313	0.94
Cytoplasmic	314	322	0.71
Transmembrane Helix	323	341	0.83
Non-Cytoplasmic	342	363	0.79
Transmembrane Helix	364	383	0.91
Cytoplasmic	384	419	0.90
Transmembrane Helix	420	441	0.93
Non-Cytoplasmic	442	445	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVGQWLAQL MSSLQDPQKV ARFQQLCGVE ALASCTAAAA ADPREDEKAE AHLTGESRRR  60
   61 ERQPGPSGGP PPPGSDRNQC PAKLGDGGAP NGVRNGRATE VGPASPRCAG LLRRNSLTDE 120
  121 EGQLAHVSNW PLHYLFCFGT ELGNELFYIL FFPFWIWNLD ALVGRRLVVI WVLVMYLGQC 180
  181 TKDIIRWPRP ASPPVVKLEV FYNSEYSMPS THAMSGTAIP ISMILLTYGR WQYPLTYGLI 240
  241 LIPCWCSLVC ISRIYMGMHS ILDVIAGFLY TILILVIFYP FVDVIDNFNQ THRYAPLIII 300
  301 GLHLALGIFS FTLDTWSTSR GDTAEILGSG AGIACGSHFT YKMGLLLDPP LDILPLARHP 360
  361 ISMTLFGKAI LRIFIGMLFV LVVRDIMKRI TVPLACKIFS IPCDDIRKAR QHMEVELPYR 420
  421 YITYGMVGFS ITFLIPYIFF FIGIS