YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUND1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNPPPQE YESDDDSYEV LDLTEYARRH HWWNRVFGHS SGPMVEKYSV ATQIVMGGVS  60
   61 GWCAGFLFQK VGKLAATAVG GGFLLLQIAS HSGYVQIDWK RVEKDVNKAK RQIKKRANKA 120
  121 APEINNIIEE ATEFVKQNIV ISSGFVGGFL LGLAS

Type	Start	End	Confidence
Cytoplasmic	1	48	0.74
Transmembrane Helix	49	68	0.70
Non-Cytoplasmic	69	73	0.70
Transmembrane Helix	74	95	0.71
Cytoplasmic	96	155	0.63