YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76675236
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHRKGRVRC KMWHVLPLVA LAPPSLLLIG SFEHETDTGV SQWEWPTARL SRESGGRRRD  60
   61 PEMRDADKLR KPIRCEEAGG PTNGESPRAG PRAGGGGPGS RPPAKTASPE KAATGPRSGA 120
  121 RSRSPPGPCG CVQGACPWAQ MTLMSMASVM AVTEPKWVSV WGRFLWAMLL SMVLGSLLAL 180
  181 LLPLGTVEEH CLTVLKGFYL LRSKLERAQP AVIKCTRPST ELSLTSRGAA LLAVKTKASP 240
  241 AGKLEAKAAL NQALEMKRQG KRQKAHKLFL HALKMDPGFV DALNEFGIFS EEDKDIIQAD 300
  301 YLYTRALTIS PHHEKALVNR DRTLPLVEEI DQRFFSIIDS KVKRVMSIPK GNSALRRVME 360
  361 ETYYHHIYHT VAIEGNTLTL SEIRHILETR YAVPGKSLEE QNEVIGMHAA MTYVNTTLLS 420
  421 RVGSVSIGDV LEIHRRVLGY VDPVEAGRFR TTQVLVGHHI PPHPQEVEKQ MQEFVQWLNS 480
  481 EDAMSLHPVE FAALAHYKLV YIHPFIDGNG RTSRLLMNLI LMQAGYPPIT IRKEQRSEYY 540
  541 HVLEVANEGD VRPFIRFIAK CTETTLDTLL FATTEYPVAL PEARPNHSGF KETLPVKP

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	32	0.72
Non-Cytoplasmic	33	133	0.92
Transmembrane Helix	134	153	0.72
Cytoplasmic	154	163	0.68
Transmembrane Helix	164	185	0.84
Non-Cytoplasmic	186	598	0.94