YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149773562, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKGRAVERS QTAALHSTPP GDKATGTRGP STPSSRDHLK EKACAEAGSA RMSLLILVSI  60
   61 FLSAAFVMFL VYKNFPQLSE EERMNMKVPR DMDDAKALGK VLSKYKDTFY VQVLVAYFAT 120
  121 YIFLQTFAIP GSIFLSILSG FLYPFPLALF LVCLCSGLGA SFCYMLSYLV GRPVVYKYLT 180
  181 EKAVKWSQQV ERHREHLINY IIFLRITPFL PNWFINITSP VINVPLKVFF IGTFLGVAPP 240
  241 SFVAIKAGTT LYQLTTAGEA VSWNSVFVLM ILALLSILPA IFQKKLKQKF E

Type	Start	End	Confidence
Cytoplasmic	1	51	0.81
Transmembrane Helix	52	72	0.90
Non-Cytoplasmic	73	116	0.79
Transmembrane Helix	117	138	0.84
Cytoplasmic	139	146	0.53
Transmembrane Helix	147	168	0.91
Non-Cytoplasmic	169	195	0.77
Transmembrane Helix	196	217	0.74
Cytoplasmic	218	225	0.68
Transmembrane Helix	226	248	0.82
Non-Cytoplasmic	249	259	0.81
Transmembrane Helix	260	282	0.90
Cytoplasmic	283	291	0.86