YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76672827
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSQLLAWV LWLQAWRVAA PCPGACVCYS EPKVTTSCPQ QGLQAVPADI PAASQRVFLH  60
   61 GNRIAYVPAA SFRACRNLTI LWLHSNALAH IDAAAFSGLA LLEQLDLSDN AQLRAVDPAT 120
  121 FRGLGRLHTL HLDRCGLREL GPGLFRGLAA LQYLYLQDNG LQALPDDAFS DLGNLTHLFL 180
  181 HGNHIPSVPE RAFRGLHSLD RLLLHQNRVA RVHPHAFRDL GRLMTLYLFA NNLSALSAEA 240
  241 LAPLRSLQYL RLNDNPWVCD CRARPLWAWL QQFRGSSSEL PCSLPARLAG RDLKRLAATD 300
  301 LEGCAVATLP APPIWTGGPV HEEPLGLPKC CQPDAVDKAS VLEAGRPASA GNALKGRVPP 360
  361 GDSAPGNRSG PRHINDSPFG TLPGSAEPPL TAVQPEGSQP PGSPNTGPRR RPGCSRKNRT 420
  421 RSQCRLGQAG SGGGGSGAVE GSGTPSGLAC SLVPLALAPV LWTVLGRC

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	468	0.97