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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|194672537, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSWFLLTLL GSGLIHVGAS NTTTVSPSVG VTRSVKASTT ESLKEETKTS NPTPSVTSSL  60
   61 TPTFSPNLTL GPVYVTTVNS SDSDNGTTRT VSTNSVVTTI SPNGTWLPDN QFTDTRTEPW 120
  121 EGNASTAATT PETFPPSDET PIIAVMVALS SLLVIVFIII VLYMLRFKKY KQAGSHSNSF 180
  181 RLSNGRTEDV EPQSVPLLAR SPSTNRKYPP LPVDKLEEEI NRRMADDNKL FREEFNALPA 240
  241 CPIQATCEAA SKEENKEKNR YVNILPYDHS RVHLTPVEGV PDSDYINASF INGYQEKNKF 300
  301 IAAQGPKEET VNDFWRMIWE QNTATIVMVT NLKERKECKC AQYWPDQGCW TYGNIRVSVE 360
  361 DVTVLVDYTV RKFCIQQVGD VTNRKPQRLI TQFHFTSWPD FGVPFTPIGM LKFLKKVKAC 420
  421 NPQYAGAIVV HCSAGVGRTG TFVVIDAMLD MMHTERKVDV YGFVSRIRAQ RCQMVQTDMQ 480
  481 YVFIYQALLE HYLYGDTELE VTSLETHLQK IYNKIPGTSN NGLEEEFKKL TSIKIQNDKM 540
  541 RTGNLPANMK KNRVLQIIPY EFNRVIIPVK RGEENTDYVN ASFIDGYRQK DSYIASQGPL 600
  601 FHTIEDFWRM IWEWKSCSIV MLTELEERGQ EKCAQYWPSD GLVSYGDITV ELKKEEECES 660
  661 YTVRDLLVTN TRENKSRQIR QFHFHGWPEV GIPSDGKGMI SIIAAVQKQQ QQSGNHPITV 720
  721 HCSAGAGRTG TFCALSTVLE RVKAEGILDV FQTVKSLRLQ RPHMVQTLEQ YEFCYKVVQE 780
  781 YIDAFSDYAN FK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle