YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76671951
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWPGPGLG PDHRPLVVPA YSPGDRSAPG LAYVAAAGAA DAERGRPLGT SCGGRSGRGR  60
   61 RRAERRGSER ASERASERAE PPAAAMGQND LMGTAEDFAD QFLRVTKQYL PHVARLCLIS 120
  121 TFLEDGIRMW FQWSEQRDYI DTTWNCGYLL ASSFVFLNLL GQLTGCILVL SRNFVQYACF 180
  181 GLFGIIALQT IAYSILWDLK FLMRNLALGG GLLLLLAESR SEGKSMFAGV PTMRESSPKQ 240
  241 YMQLGGRVLL VLMFMTLLHF DASFFSILQN IVGTALMILV AIGFKTKLAA LTLVVWLFAI 300
  301 NVYFNAFWTI PVYKPMHDFL KYDFFQTMSV IGGLLLVVAL GPGGVSMDEK KKEW

Type	Start	End	Confidence
Cytoplasmic	1	112	0.83
Transmembrane Helix	113	131	0.39
Non-Cytoplasmic	132	145	0.48
Transmembrane Helix	146	168	0.78
Cytoplasmic	169	173	0.48
Transmembrane Helix	174	196	0.87
Non-Cytoplasmic	197	200	0.52
Transmembrane Helix	201	219	0.63
Cytoplasmic	220	240	0.75
Transmembrane Helix	241	260	0.77
Non-Cytoplasmic	261	264	0.67
Transmembrane Helix	265	284	0.88
Cytoplasmic	285	291	0.70
Transmembrane Helix	292	312	0.89
Non-Cytoplasmic	313	323	0.90
Transmembrane Helix	324	346	0.90
Cytoplasmic	347	354	0.92