YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76668481
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTAGGASA AESCPPTSAG PSAAAAVEDL SKVSDEELLQ WSKEELIRCL RRAEAEKVSA  60
   61 MLDHSNLIRE VNRRLQLHLG EIRGLKDINQ KLQEDNQELR DLCCFLDDDR QKGKRVSREW 120
  121 QRLGRYTAGV MHKEVALYLQ KLKELEVKQE EVVKENMELK ELCVLLDEEK GPGCAGSRCS 180
  181 IDSQASLCQL SATTAPYVRD VGDGSSTSST GSTDSPDHKH HASGSSPEHL QKPRAEGSPE 240
  241 HSKHGSASPE HLQKARASGT PDHPKALKGP SPEHHKPLCK GSPEQQRHPH AGNSPETLPK 300
  301 HVLSGSPEHF QKHRPGGSPE HTRHSGGSPE HLQKHALGGS LEHLPRVRGT SPEHLKQHFG 360
  361 GSPDHKHVGG GGSGSSSREG TLRRQAQEDA SAHHRNVYSG MNGGSVRAAE LGQLCRQLR

Type	Start	End	Confidence
Signal Peptide	1	24	0.90
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	419	0.99