YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76666271
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METAAEENTE QSRERKGCFE CCIKCLGGVP YASLVATILC FSGVALFCGC GHVALAGTVA  60
   61 ILEQHFSTNT SDHALLSEVI QLMQYVIYGI ASFFFLYGII LLAEGFYTTS AVKELHGEFK 120
  121 TTACGRCISG MFVFLTYVLG VAWLGVFGFS AVPVFMFYNI WSTCEVIKSP QTNGTAGVEQ 180
  181 ICVDIRQYGI IPWNAFPGRI CGSALENICN TNEFYMSYHL FIVACAGAGA TVIALIHFLM 240
  241 ILSSNWAYLK DASKMQAYQD IKAKEEQELQ DIQSRSKEQL NSYT

Type	Start	End	Confidence
Cytoplasmic	1	33	0.93
Transmembrane Helix	34	56	0.88
Non-Cytoplasmic	57	84	0.88
Transmembrane Helix	85	107	0.89
Cytoplasmic	108	127	0.85
Transmembrane Helix	128	151	0.87
Non-Cytoplasmic	152	219	0.94
Transmembrane Helix	220	241	0.93
Cytoplasmic	242	284	0.94