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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76666130
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDGWVKSG EKVYEAEPRY SPAILSSSLP FMPPPTKQWK GLYVRLEWCN YKSRIAKGLD  60
   61 PHQTLGSFTP AFRMSSFAVF IGSIHRKIEM KVHMHTKFCL ICLLTFIFHH CNHCHEEHDH 120
  121 GSEEHHRHHR GMTESESSEF SVLDAENEKK YYIEKLFDRY GENGRLSFFG LEKLLTNLGL 180
  181 GEIKVVEINH EDLGHDHVSH LDILAVQEGK HFHSHNHQHS HNHLNSENQT VTSVSAKRNR 240
  241 KCDPEKETIE VSVKSDDKHM HDHSHRLCHH HCLRHHLDHN TTRHFPNDSI THSEHGEPSH 300
  301 EPSTETNKTQ EQSESKLPKG KRKRKEKKSN ENSGVITPGF PSNHDQGEQY EHNRVHKPDR 360
  361 VHNPGHSHVR LPEHNGHDPG HGHQDLDPDI EGELRHTRKR EAPHVKKSAI YSAASHKDHN 420
  421 EDDRQHECLN VTQLLKYHGH RANSPISSDL FTYLCPALLY QIDSRLCIEH FDKLLVEDLN 480
  481 KDKNQVPEDK ANIGASAWIC GIISITVISL LSLLGVILVP IINQGCFKFL LTFLVALAVG 540
  541 TMSGDALLHL LPHSQGGHDH SHQHAHGHGH SHGHESKKFL EEYDAVLKGL VALGGIYLLF 600
  601 IIEHCIRMFK HYKQQRGKEK WFMKQNTEES AIGRKLSDHK LNNTPDADWL QLKPLAGTDD 660
  661 SVVSEDRLNE TELTDLEGQQ ESPPKNYLRI EEEKIMDHSH SDGMHAIHEH DLHAAAHNHH 720
  721 DESKTVLRKH NHQWHHKHSH HSHGPCHSGS DLKETGIANI AWMVIMGDGI HNFSDGLAIG 780
  781 AAFSAGLTGG ISTSIAVFCH ELPHELGDFA VLLKAGMTVK QAIVYNLLSA MMAYIGMLIG 840
  841 TAVGQYANNI TLWIFAITAG MFLYVALVDM LPEMLHGDGD NEEHGFCPVG QFILQNLGLL 900
  901 FGFAIMLVIA LYEDKIVFDL QF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle