YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76660080
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQTPLPYIV ARLCQSHPFR TCSTKCPSHW RISPTYSFLM RIGQLDEECL EYKIHVNQSN  60
   61 GSATFHSFLC LLSPPDLDMA GRHQNRSFPL PGIHSSAQVH AFGNCADSDM LEEDAEVYEL 120
  121 RSRGKEKIRR STSKDRLDDI IVLTKDIQEG DTLNAIALQY CCTVADIKRV NNLISDQDFF 180
  181 ALRSIKIPVK KFSSLTETLY PPKGRQASRP STVQYLPEQQ EVLSANDSLS STESAGSFLK 240
  241 EVDRDIEQIV KCTDTKRENL NEVVSALTAQ QVRFEPDNKN IQRKDPYYGA DWGIGWWTAV 300
  301 VIMLIVGIIT PVFYLLYYEI LAKVDVSHHS TVDSSHLHSG VTPPSQQREM ENGIAPTKGI 360
  361 PFGPQDDRKL YNQDSQLPAA QHKT

Type	Start	End	Confidence
Cytoplasmic	1	292	0.54
Transmembrane Helix	293	317	0.85
Non-Cytoplasmic	318	384	0.58