YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76658818
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKDTSFAKD GGEPELAAMG SAAFRCLPSP ELLEPRTWER GIIFLWLAPS RRRRTALQCH  60
   61 LEAAGAVRRK KFEVSSRNVG SGGLLGSGWY LGAASQPQIG GRGRNGDESC SRALRGRPQH 120
  121 RPPRRTMLRG KSRLNVEWLG YSPGLLLERR PLLAGRTPRS PGRPALAGTS GVARLDRSPA 180
  181 YPTERDCGAQ PASERLSCGR GDAMERLDKA ALNALQPSDF RNESSLASTL KTLLFFTALM 240
  241 ITVPIGLYFT TKSYVFEGAF GMSNRDSYFY AAIVAVVAVH VVLALFVYVA WNEGSRQWRE 300
  301 GKQD

Type	Start	End	Confidence
Cytoplasmic	1	229	0.90
Transmembrane Helix	230	251	0.89
Non-Cytoplasmic	252	267	0.86
Transmembrane Helix	268	291	0.93
Cytoplasmic	292	304	0.88