YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76658092
Protein type: Globular with Signal Peptide
Type Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRVLAPSG SLGLDGESSA SQPGTRVRPV GIVACGTRAS PEPREESGRV GADKRVRGAG  60
   61 RRALRVCDSA SCSRRGGGPC VREGDTVGRG ERNAARRRKE NETPAGGGEV AAKGVPVAKM 120
  121 CAFGLESVGA ELAGKASFSG VPASRRPPTT MSSTLSPTDF DSLEIQGQYS DINNRWDLPD 180
  181 SDWDNDSSSA RLFERSRIKA LADEREAVQK KTFTKWVNSH LARVTCRVGD LYSDLRDGRN 240
  241 LLRLLEVLSG ETLPKPTKGR MRIHCLENVD KALQFLKEQK VHLENMGSHD IVDGNHRLTL 300
  301 GLVWTIILRF QIQDISVETE DNKEKKSAKD ALLLWCQMKT AGYPNVNVNN FTTSWRDGLA 360
  361 FNAIVHKHRP DLLDFESLKK CNAHYNLQNA FNLAEKELGL TKLLDPEDVN VDQPDEKSII 420
  421 TYVATYYHYF SKMKALAVEG KRIGKVLDHA MEAERLVEKY ESLASELLQW IEQTIVTLND 480
  481 RQLANSLSGV QNQLQSFNSY RTVEKPPKFT EKGNLEVLLF TIQSKLRANN QKVYTPREGR 540
  541 LISDINKAWE RLEKAEHERE LALRTELIRQ EKLEQLAARF DRKAAMRETW LSENQRLVSQ 600
  601 DNFGLELAAV EAAVRKHEAI ETDIVAYSGR VQAVDAVAAE LAAERYHDIK RIAARQHNVS 660
  661 RLWDFLRQMV AARRERLLLN LELQKVFQDL LYLMDWMEEM KGRLQSQDLG KHLTGVEDLL 720
  721 QLHELVEADI AVQAERVRAV SASALRFCDP GKARPGACGL WVEEKEQWLN GLALPERLED 780
  781 LEVVQQRFET LEPEMNALAA RITAVNDIAE QLLKANPPGK DSIVNTQKQL NHRWQQFRSL 840
  841 ADGKKAALTS ALSIQNYHLE CTETQAWMRE KTKVIESTQG LGNDLAGVLA LQRKLAGTER 900
  901 DLEAIAARVG ELTREANALA AGHPAQAPAI NARLGEVQAG WEDLRATMRR REESLGEARR 960
  961 LQDFLRSLDD FQAWLGRTQT SVASEEGPAT LPEAEALLAQ HAALRGEVER ARSEYSQLRA1020
 1021 VGEEVTRDQA DPQCLFLRQR LEALGTGWEE LGRMWESRQG RLAQAHGFQG FLRDARQAEG1080
 1081 VLSSQEYVLS HTEMPGTLQA ADATIKKLED FMSTMEANGE RIRGLLEAGR QLVSEGNVHA1140
 1141 EKIQEKADSV ERRHKKNQEA VQQLLGRLRD NREQQHFLQD CHELKLWIDE KMLTAQDVSY1200
 1201 DEARNLHTKW QKHQAFMAEL AANKDWLDKV DKEGRELTLE KPELKALVWE KLEDLHRRWD1260
 1261 ELETTTQAKA RSLFDANRAE LFAQSCSALE SWLESLQAQL HSDDYGKDLT SVNILLKKQQ1320
 1321 MLEREMAVRE KEVEAIQAQA KALAQEDQGA GEVERTSRAV EEKFRALCQP MEERCRRLQA1380
 1381 SREQHQFHRD VEDEILWVTE RLPMASSMEH GKDLPSVQLL MKKNQTLQKE IQGHEPRIAD1440
 1441 LTERQRTLGV AAAGPELAEL QEMWKRLGHE LELRGKRLEE ALRAQQFYRD AAEAEAWMGE1500
 1501 QELHMMGQEK AKDELSAQAE VKKHQVLEQA LADYAQTIHQ LAASSQDMID HEHPENTRLS1560
 1561 IRQAQVDKLY AGLKELAGER RERLQEHLRL CQLRRELDDL EQWIQEREVV AASHELGQDY1620
 1621 EHVTMLRDKF REFSRDTSTI GQERVDGANA LANGLIAGGH AARATVAEWK DSLNEAWADL1680
 1681 LELLDTRGQV LAAAHELQRF LHGARQALAR VQHKQQQLPD GTGRDLNAAE ALQRRHCAFE1740
 1741 HDIQALSAQV QQVQDDGHRL QKAYAGDKAE EIGRHMQAVA EAWAQLQGSS AARRQLLLDT1800
 1801 TDKFRFFKAV RELMLWMDGV NLQMDAQERP RDVSSADLVI KNHQGIKAEI EARADRFSSC1860
 1861 VDMGQGLLAR SHYAAEEISE KLSQLQARRQ ETADKWQEKM DWLQLVLEVL VFGRDAGVAE1920
 1921 AWLCSQEPLV RSAELGCTVD EVESLIKRHE AFQKSAVAWE ERFSALEKLT ALEEQEKERK1980
 1981 RKREEEERRK LPPPPEPPAS PPEGHLVDSH TAPATARDGV HPRLPASVNG VCTDAEGPQP2040
 2041 LMEQQRLEQG GLPEGPGSGA GDEANGPRGE KQARTQGPTP PIMPQSRSSE SARVATLPTR2100
 2101 GPELSAQEQM EGLLCRKQEM EAFGKKAANR SWQNVYCVLR RGSLGFYKDA KAASAGVPYH2160
 2161 GEVPVSLARA QGSVAFDYRK RKHVFKLGLQ DGKEYLFQAK DEAEMSSWLR VVNAAIATAS2220
 2221 SASGEPEEPA VPSATRGMTR AMTMPPVSPA GAEGPVVLRS KDGREREREK RFSFFKKNK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle