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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76657571
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGIVVFRRR WSVGSDDLVL PAIFLFLLHT TWFVILSVVL FGLVYNPDEA CSLNLVDHGR  60
   61 GYLGILLSCM IAEMAIIWLS MRGGILYTEP RESMQYVLYV RLAWLMDWLG EAVAFILRST 120
  121 VSPVPCPLAS HRSSAGMVVC NWVVILSVCI TVLCVFDPTG RTFVKLRATK RRQRNLRTYN 180
  181 LRHRLEEGQA TSWSRRLKVF LCCTRTKDSQ SDAYSEIAYL FAEFFRDLDI VPSDIIAGLV 240
  241 LLRQRQRAKR NAVLDEANND ILAFLSGMPV TRNTKYLDLK NSHEMLRYKE VCYYMLFALA 300
  301 AYGWPMYLMR KPACGLCQLA RSCSCCLCPA RPRFAPGVTI EEDNCCGCNA IAIRRHFLDE 360
  361 NMTAVDIVYT SCHDAVYETP FYVAVDHDKK KVVISIRGTL SPKDALTDLT GDAERLPVEG 420
  421 HHGTWLGHKG MVLSAEYIKK KLEQEMVLSQ AFGRDLGRGT KHYGLIVVGH SLGAGTAAIL 480
  481 SFLLRPQYPT LKCFAYSPPG GLLSEDAMEY SKEFVTAVVL GKDLVPRIGL SQLEGFRRQL 540
  541 LDVLQRSTKP KWRIIVGATK CIPKSELPEE VEVTTLASTR LWTHPSDLTI ALSASTPLYP 600
  601 PGRIIHVVHN HPAEQCCCCE QEEPTYFAIW GDNKAFNEVI ISPAMLHEHL PYVVMEGLNK 660
  661 VLENYNKGKT ALLSAAKVMV SPTEVDLTPE LIFQQQPLPT GPPVPAGLAL ELPAADHRNS 720
  721 SIRSKSQSEM SLEGFSEGRL LSPVAAASAA RQDPVELLLL STQERLAAEL QARRAPLATM 780
  781 ESLSDTESLY SFDSRRSSGF RSIRGSPSLH AVLERDEGHL FYIDPAIPEE NPSLSSRTEL 840
  841 LAADSLSKHS QDTQPLEAAL GSGGVTPERP PSAAANEEPE EGGGGAAPRS GELALQEGRL 900
  901 GDSPSPQVLE FAEFIDSLFN LDSKSSSFQD LYCMVVPESP TSDYAEGPKS PSQQEILLRA 960
  961 QFEPNLVPKP PRLFAGSADP SSGISLSPSF PLSSSGELMD LTPTGLSSQE CLAVDKVRTS1020
 1021 TPAGRGASPT KQDDLVISAR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle