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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76655599
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKERRPYC SLTKNRREKE RRYTNSSADN EECRVPTQKS YSSSETLKAF DHDSSRLLYG  60
   61 NRVKDLVHRE ADEFSRQGQN FTLRQLGVCE PATRRGLAFC AEMGLPHRGY SISAGSDADT 120
  121 ENEAVMSPEH AMRLWGRGVK SGRSSCLSSR SNSALTLTDT EHENKSDSET EQPANNQGQS 180
  181 TLQPLPPSHK QHSAQHHPSI TSLNRNSLTN RRNQSPAPPA ALPAELQTTP ESVQLQDSWV 240
  241 LGSNVPLESR HFLFKTGTGT TPLFSTATPG YTMASGSVYS PPTRPLPRNT LSRSAFKFKK 300
  301 SSKYCSWKCT ALCAVGVSVL LAILLSYFIA MHLFGLNWQL QQTENDTFEN GKVNSDTMPT 360
  361 NTVSLPSGDN GKLGGFTQEN NTIDSGELDI GRRAIQEVPP GIFWRSQLFI DQPQFLKFNI 420
  421 SLQKDALIGV YGRKGLPPSH TQYDFVELLD GSRLIAREQR NLLESERAGR QARSVSLHEA 480
  481 GFIQYLDSGI WHLAFYNDGK NAEQVSFNTI VIESVVECPR NCHGNGECVS GTCHCFPGFL 540
  541 GPDCSRAACP VLCSGNGQYS KGRCLCFSGW KGTECDVPTT QCIDPQCGGR GICIMGSCAC 600
  601 NSGYKGENCE EADCLDPGCS NHGVCIHGEC HCNPGWGGNN CEILKTMCPD QCSGHGTYLQ 660
  661 ESGSCTCDPN WTGPDCSNEI CSVDCGSHGV CMGGSCRCEE GWTGPACNQR ACHPRCAEHG 720
  721 TCKDGKCECS QGWNGEHCTI AHYLDKIVKE GCPGLCNSNG RCTLDQNGWH CVCQPGWRGA 780
  781 GCDVAMETLC TDSKDNEGDG LIDCMDPDCC LQSSCQNQPY CRGLPDPQDI ISQSLQSPSQ 840
  841 QAAKSFYDRI SFLIGSDSTH VIPGESPFNK SLASVIRGQV LTADGTPLIG VNVSFFHYPE 900
  901 YGYTITRQDG MFDLVANGGA SLTLVFERSP FLTQYHTVWI PWNVFYVMDT LVMKKEENDI 960
  961 PSCDLSGFVR PNPIIVSSPL STFFRSSPED SPIIPETQVL HEETTIPGTD LKLSYLSSRA1020
 1021 AGYKSVLKIT MTQSVIPFNL MKVHLMVAVV GRLFQKWFPA SPNLAYTFIW DKTDAYNQKV1080
 1081 YGLSEAVVSV GYEYESCLDL TLWEKRTAIL QGYELDASNM GGWTLNKHHV LDVQNGILYK1140
 1141 GNGENQFISQ QPPVVSSIMG NGRRRSISCP SCNGQADGNK LLAPVALACG IDGSLYVGDF1200
 1201 NYVRRIFPSG NVTSVLELRN KDFRHSSNPA HRYYLATDPV TGDLYVSDTN TRRIYRPKSL1260
 1261 TGAKDLTKNA EVVAGTGEQC LPFDEARCGD GGKAVEATLM SPKGMAIDKN GLIYFVDGTM1320
 1321 IRKVDQNGII STLLGSNDLT SARPLTCDTS MHISQVRLEW PTDLAINPMD NSIYVLDNNV1380
 1381 VLQITENRQV RIAAGRPMHC QVPGVEYSAG KHAVQTTLES ATAIAVSYSG VLYITETDEK1440
 1441 KINRIRQVTT DGEISLVAGI PSECDCKNDA NCDCYQSGDG YAKDAKLSAP SSLAASPDGT1500
 1501 LYIADLGNIR IRAVSKNKPL LNSMNFYEVA SPTDQELYIF DINGTHQYTV SLVTGDYLYN1560
 1561 FSYSNDNDIT AVTDSNGNTL RIRRDPNRMP VRVVSPDNQV IWLTIGTNGC LKSMTAQGLE1620
 1621 LVLFTYHGNS GLLATKSDET GWTTFFDYDS EGRLTNVTFP TGVVTNLHGD MDKAITVGIE1680
 1681 SSSREEDVSI TSNLSSIDSF YTMVQDQLRN SYQIGYDGSL RIIYASGLDS HYHTEPHILA1740
 1741 GTANPTVAKR NMTLPGENGQ NLVEWRFRKE QAQGKVNVFG RKLRVNGRNL LSVDFDRTTK1800
 1801 TEKIYDDHRK FLLRIAYDTS GHPTLWLPSS KLMAVNVTYS STGQIASIQR GTTSEKVDYD1860
 1861 GQGRIVSRVF ADGKTWSYTY LEKSMVLLLH SQRQYIFEYD MWDQLSAITM PSVARHTMQT1920
 1921 IRSIGYYRNI YNPPESNASV ITDYNEEGLL LQTAFLGTSR RVLFKYRRQT RLSEILYDST1980
 1981 RVSFTYDETA GVLKTVNLQS DGFICTIRYR QIGPLIDRQI FRFSEDGMVN ARFDYSYDNS2040
 2041 FRVTSMQGVI NETPLPIDLY QFDDISGKVE QFGKFGVIYY DINQIISTAV MTYTKHFDAH2100
 2101 GRIKEIQYEI FRSLMYWITI QYDNMGRVTK REIKIGPFAN TTKYAYEYDV DGQLQTVYLN2160
 2161 EKIMWRYNYD LNGNLHLLNP SSSARLTPLR YDLRDRITRL GDVQYRLDED GFLRQRGTEI2220
 2221 FEYSSKGLLT RVYSKGSGWT VIYRYDGLGR RVSSKTSLGQ HLQFFYADLT YPTRITHVYN2280
 2281 HSSSEITSLY YDLQGHLFAM EISSGDEFYI ASDNTGTPLA VFSSNGLMLK QIQYTAYGEI2340
 2341 YFDSNIDFQL VIGFHGGLYD PLTKLIHFGE RDYDILAGRW TTPDIEIWKR IGKDPAPFNL2400
 2401 YMFRNNNPAS KIHDVKDYIT DVNSWLVTFG FHLHNAIPGF PVPKFDLTEP SYELVKSQQW2460
 2461 DDVPPIFGVQ QQVARQAKAF LSLGKMAEVQ VSRRKGSGAP SWLWFATVKS LIGKGVMLAV2520
 2521 SQGRVQTNVL NIANEDCIKV AAVLNNAFYL ENLHFTIEGK DTHYFIKTST PESDLGTLRL2580
 2581 TSGRKALENG INVTVSQSTT VVNGRTRRFA DVEMQFGALA LHVRYGMTLD EEKARILEQA2640
 2641 RQRALARAWA REQQRVRDGE EGARLWTEGE KRQLLSAGKV QGYDGYYVLS VEQYPELADS2700
 2701 ANNIQFLRQS EIGKR

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