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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76655597
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKERRPYC SLTKNRREKE RRYTNSSADN EECRVPTQKS YSSSETLKAF DHDSSRLLYG  60
   61 NRVKDLVHRE ADEFSRQGQN FTLRQLGVCE PATRRGLAFC AEMGLPHRGY SISAGSDADT 120
  121 ENEAVMSPEH AMRLWGRGVK SGRSSCLSSR SNSALTLTDT EHENKSDSET EQPANNQGQS 180
  181 TLQPLPPSHK QHSAQHHPSI TSLNRNSLTN RRNQSPAPPA ALPAELQTTP ESVQLQDSWV 240
  241 LGSNVPLESR HFLFKTGTGT TPLFSTATPG YTMASGSVYS PPTRPLPRNT LSRSAFKFKK 300
  301 SSKYCSWKCT ALCAVGVSVL LAILLSYFIA MHLFGLNWQL QQTENDTFEN GKVNSDTMPT 360
  361 NTVSLPSGDN GKLGGFTQEN NTIDSGELDI GRRAIQEVPP GIFWRSQLFI DQPQFLKFNI 420
  421 SLQKDALIGV YGRKGLPPSH TQYDFVELLD GSRLIAREQR NLLESERAGR QARSVSLHEA 480
  481 GFIQYLDSGI WHLAFYNDGK NAEQVSFNTI VIESVVECPR NCHGNGECVS GTCHCFPGFL 540
  541 GPDCSRAACP VLCSGNGQYS KGRCLCFSGW KGTECDVPTT QCIDPQCGGR GICIMGSCAC 600
  601 NSGYKGENCE EADCLDPGCS NHGVCIHGEC HCNPGWGGNN CEILKTMCPD QCSGHGTYLQ 660
  661 ESGSCTCDPN WTGPDCSNEI CSVDCGSHGV CMGGSCRCEE GWTGPACNQR ACHPRCAEHG 720
  721 TCKDGKCECS QGWNGEHCTI EGCPGLCNSN GRCTLDQNGW HCVCQPGWRG AGCDVAMETL 780
  781 CTDSKDNEGD GLIDCMDPDC CLQSSCQNQP YCRGLPDPQD IISQSLQSPS QQAAKSFYDR 840
  841 ISFLIGSDST HVIPGESPFN KSLASVIRGQ VLTADGTPLI GVNVSFFHYP EYGYTITRQD 900
  901 GMFDLVANGG ASLTLVFERS PFLTQYHTVW IPWNVFYVMD TLVMKKEEND IPSCDLSGFV 960
  961 RPNPIIVSSP LSTFFRSSPE DSPIIPETQV LHEETTIPGT DLKLSYLSSR AAGYKSVLKI1020
 1021 TMTQSVIPFN LMKVHLMVAV VGRLFQKWFP ASPNLAYTFI WDKTDAYNQK VYGLSEAVVS1080
 1081 VGYEYESCLD LTLWEKRTAI LQGYELDASN MGGWTLNKHH VLDVQNGILY KGNGENQFIS1140
 1141 QQPPVVSSIM GNGRRRSISC PSCNGQADGN KLLAPVALAC GIDGSLYVGD FNYVRRIFPS1200
 1201 GNVTSVLELS SNPAHRYYLA TDPVTGDLYV SDTNTRRIYR PKSLTGAKDL TKNAEVVAGT1260
 1261 GEQCLPFDEA RCGDGGKAVE ATLMSPKGMA IDKNGLIYFV DGTMIRKVDQ NGIISTLLGS1320
 1321 NDLTSARPLT CDTSMHISQV RLEWPTDLAI NPMDNSIYVL DNNVVLQITE NRQVRIAAGR1380
 1381 PMHCQVPGVE YSAGKHAVQT TLESATAIAV SYSGVLYITE TDEKKINRIR QVTTDGEISL1440
 1441 VAGIPSECDC KNDANCDCYQ SGDGYAKDAK LSAPSSLAAS PDGTLYIADL GNIRIRAVSK1500
 1501 NKPLLNSMNF YEVASPTDQE LYIFDINGTH QYTVSLVTGD YLYNFSYSND NDITAVTDSN1560
 1561 GNTLRIRRDP NRMPVRVVSP DNQVIWLTIG TNGCLKSMTA QGLELVLFTY HGNSGLLATK1620
 1621 SDETGWTTFF DYDSEGRLTN VTFPTGVVTN LHGDMDKAIT VGIESSSREE DVSITSNLSS1680
 1681 IDSFYTMVQD QLRNSYQIGY DGSLRIIYAS GLDSHYHTEP HILAGTANPT VAKRNMTLPG1740
 1741 ENGQNLVEWR FRKEQAQGKV NVFGRKLRVN GRNLLSVDFD RTTKTEKIYD DHRKFLLRIA1800
 1801 YDTSGHPTLW LPSSKLMAVN VTYSSTGQIA SIQRGTTSEK VDYDGQGRIV SRVFADGKTW1860
 1861 SYTYLEKSMV LLLHSQRQYI FEYDMWDQLS AITMPSVARH TMQTIRSIGY YRNIYNPPES1920
 1921 NASVITDYNE EGLLLQTAFL GTSRRVLFKY RRQTRLSEIL YDSTRVSFTY DETAGVLKTV1980
 1981 NLQSDGFICT IRYRQIGPLI DRQIFRFSED GMVNARFDYS YDNSFRVTSM QGVINETPLP2040
 2041 IDLYQFDDIS GKVEQFGKFG VIYYDINQII STAVMTYTKH FDAHGRIKEI QYEIFRSLMY2100
 2101 WITIQYDNMG RVTKREIKIG PFANTTKYAY EYDVDGQLQT VYLNEKIMWR YNYDLNGNLH2160
 2161 LLNPSSSARL TPLRYDLRDR ITRLGDVQYR LDEDGFLRQR GTEIFEYSSK GLLTRVYSKG2220
 2221 SGWTVIYRYD GLGRRVSSKT SLGQHLQFFY ADLTYPTRIT HVYNHSSSEI TSLYYDLQGH2280
 2281 LFAMEISSGD EFYIASDNTG TPLAVFSSNG LMLKQIQYTA YGEIYFDSNI DFQLVIGFHG2340
 2341 GLYDPLTKLI HFGERDYDIL AGRWTTPDIE IWKRIGKDPA PFNLYMFRNN NPASKIHDVK2400
 2401 DYITDVNSWL VTFGFHLHNA IPGFPVPKFD LTEPSYELVK SQQWDDVPPI FGVQQQVARQ2460
 2461 AKAFLSLGKM AEVQVSRRKG SGAPSWLWFA TVKSLIGKGV MLAVSQGRVQ TNVLNIANED2520
 2521 CIKVAAVLNN AFYLENLHFT IEGKDTHYFI KTSTPESDLG TLRLTSGRKA LENGINVTVS2580
 2581 QSTTVVNGRT RRFADVEMQF GALALHVRYG MTLDEEKARI LEQARQRALA RAWAREQQRV2640
 2641 RDGEEGARLW TEGEKRQLLS AGKVQGYDGY YVLSVEQYPE LADSANNIQF LRQSEIGKR

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