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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76652817
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFCQSSLR PVSARNKTRG FTSEKDFEDY IRYDNRSTNV LAALVFEHTF NHSRDPLPLA  60
   61 VKYHLRFSYT RRNYMWTQTG SFFLKETEGW HTTSLFPLFP NPGPREPTSP DGGEPGYIRE 120
  121 GFLAVQHAVD RAIMHHHANA SAHQLFEKLT VIAKRFPYPP FISDPFLVAI QYQLPLLLML 180
  181 SFTYTSLSII RAIVQEKEKK LKEYMRMMGL SSWLLWTAWF LLFFLLLLVA VSFMTLLFCV 240
  241 KVKKDVAVLA HSDPTLVLVF LACFAVSSIS FSFMVSTFFS KANMAAAIGG FLYFFSYIPY 300
  301 FFVAPRYNWM TLSQKLFSCL LSNVAMAMGA QLIGKFEAKG TGIQWRDLLS PVNVDDDFTF 360
  361 GQVLGMLLLD SVLYGLVAWY VEAVLPGQFG VPQPWYFFIL PSYWCGRPRT ALGKEEEDDD 420
  421 PEKVLRTEYF EAEPEDLVAG IKIKHVSKVF RVGNKGKAAV RDLNLNLYEG QITVLLGHNG 480
  481 AGKTTTLSML TGLFPPTSGR AYISGYEVSQ DMDQIRKSLG LCPQHDVLFD DLTVAEHLYF 540
  541 YAQLKGLPRQ KCPEEVKRML HVLGLEEKRD SRSRFLSGGM RRKLSIGIAL IAGSKARALP 600
  601 SSRGCPSALQ VLMLDEPTSG VDAISRRAIW DLLQQHKSDR TILLTTHFMD EADLLGDRIA 660
  661 IMAKGELQCC GSSLFLKEKY GAGYHMTLVK EPHCNPEGIS RLVQHHVPNA TLESSAGAEL 720
  721 SFILPKESTH RFESLFAKLE KKQKELGIAS FGASVTTMEE VFLRVGKLVD SSMDIQAIQL 780
  781 PALQYQHERR ASDWAVDGHL CGTMDPTDGV GALIEEECTA VRLNTGLALH CQQFWAMFLK 840
  841 KATYSWREWK VAAAQVLVPV TCLTLALLAI NYSSEIFDDP LLKLTLGEYG HTVVPFSVPG 900
  901 TSRLDQQLSE HLKDMLQFLI FRASVEGGGF NERCLVAASF RDTGERTVIT ALFNNQAYHS 960
  961 PATVLAVVDN LLFKLLCGPR ASITVSNFPQ PRSALQAAKD QFNEGRKGFD IALNLLFAMA1020
 1021 FLASTFSILA VSERAIQAKH VQFVSGVHVA IFWLSALLWD LLSFLTSSSC TSHTGAVCPP1080
 1081 VLTGLCFLPT AVKLEELSRT LDRVFLVLPN HCLGMAVSNF YENYETRRYC TSSDVAAHYC1140
 1141 RKYNIQYQEN FYAWSTPGVG RFVTSMAASG FAYLTLLFLV EADLLWRLKT CLCAFQRRRA1200
 1201 LVKVYTRTAA LPEDQDVMDE RNRILSPSLD SLLDTPLIIK ELSKVYEQRA PLLAVDKVSL1260
 1261 AVQKGECFGL LGFNGAGKTT TFKMLTGEET ITSGDAFVGG YSISSDIGKV RQRIGYCPQF1320
 1321 DALLDHMTGR ETLVMFARLR GIPERHIGAC VENTLRGLLL EPHANKLVRM YSGGNKRKLS1380
 1381 TGIALLGEPA VIFLDEPSTG MDPVARRLLW DTVARARESG KAIVITSHSM EECEALCTRL1440
 1441 AIMVQGQFKC LGSPQHLKSK FGSGYSLRAK IRSDGQQEAL EEFKAFVGLT FPGSVLEDEH1500
 1501 QGMVHYHLPG DDLSWAKVFG VLEKATEKYG VDDYSVSQTS LEQVFLSFAH VQPPTEDAGP1560
 1561 

YRC Informatics Platform - Version 3.0
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