YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAPA_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASGTMAK HEQILVLDPP TDLKFKGPFT DVVTTNLKLR NPSDRKVCFK VKTTAPRRYC  60
   61 VRPNSGIIDP GLTVTVSVML QPFDYDPNEK SKHKFMVQTI FAPPNISDME AVWKEAKPDE 120
  121 LMDSKLRCVF EMPNENDKLN DMEPSKAVPL NAAKQDGPVP KPHSVSLSDT ETRKLVEECK 180
  181 RLQGEMMKLS EENRLLRDEG LRLRKVAHSE KPGSTSAVSF RENVTSPLPS LLVVIAAIFI 240
  241 GFFLGKFIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	225	0.70
Transmembrane Helix	226	248	0.86
Cytoplasmic	249	249	0.69