YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57997094
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLSDPVRR RALARLVLRL NAPLCVLSYV AGIAWFLALV FPPLTQRTYM SENAMGSTMV  60
   61 EEQFAGGDRA RAFARDFAAH RKKSGALPVA WLERTMRSVG LEVYTQSFSR KLPFPDETHE 120
  121 RMVSGTNVYG ILRAPRAAST ESLVLTVPCG SDSTNSQAVG LLLALAAHFR GQIYWAKDIV 180
  181 FLVTEHDLLG TEAWLEAYHD VNVTGMQSSP LQGRAGAIQA AVALELSSDV VTSLDVAVEG 240
  241 LNGQLPNLDL LNLFQTFCQK GGLLCTLQGK LQPEDWTSLD GPLQGLQTLL LMVLRQASGR 300
  301 PHGSHGLFLR YRVEALTLRG INSFRQYKYD LVAVGKALEG MFRKLNHLLE RLHQSFFLYL 360
  361 LPGLSRFVSI GLYMPAVGFL LLVLGLKALE LWMQLHEAGM GLEEPGGAPG PSVPLPPSQG 420
  421 VGLASLVAPL LISQAMGLAL YVLPVLGQHV ATQHFPVAEA EAVVLTLLAI YAAGLALPHN 480
  481 THRVVSTQAP DRGWMALKLV ALIYLALQLG CIALTNFSLG FLLATTMVPT AALAKPHGPR 540
  541 TLYAALLVLT SPAATLLGSL FLWRELQEAP LSLAEGWQLF LAALAQGVLE HHTYGALLFP 600
  601 LLSLGLYPCW LLFWNVLFWK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	363	0.97
Transmembrane Helix	364	386	0.86
Cytoplasmic	387	420	0.89
Transmembrane Helix	421	443	0.85
Non-Cytoplasmic	444	459	0.73
Transmembrane Helix	460	479	0.89
Cytoplasmic	480	499	0.80
Transmembrane Helix	500	524	0.88
Non-Cytoplasmic	525	541	0.80
Transmembrane Helix	542	563	0.94
Cytoplasmic	564	570	0.81
Transmembrane Helix	571	589	0.78
Non-Cytoplasmic	590	595	0.72
Transmembrane Helix	596	618	0.90
Cytoplasmic	619	620	0.81